Affycomp III: A Benchmark for Affymetrix GeneChip Expression Measures

In April 2011, Philippe Serhal tried to reproduce the Affycomp II assessment of RMA, an effort we realized was doomed to failure. That assessment is important because (along with MAS 5.0) it constitutes a conceptual base-point of this benchmark tool. However, despite the hopeful subtitle, our assessments, produced on entry submission and never updated, had become incommensurable. All but the most recent had become slightly inconsistent with today's affycomp package, hence incomparable, or at least not easily comparable.

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In response, Affycomp III ...

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